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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000203

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
178 GB
File formats
  • FASTQ
  • BAM
Research
hum0138
Date published
2020-09-28
Date modified
2021-03-17
DDBJ Search
JGAD000203 (opens in a new tab)
JGA Study
JGAS000134 (opens in a new tab)

Analysis method

WES

Materials and participants
Liver cirrhosis (ICD10: K746): 1 case (10 samples)
Hepatocellular carcinoma (ICD10: C220): 4 cases (4 samples)
  • Health status
    Affected
  • Subject count
    14 (Sample)
Disease
Liver cirrhosis (K746)
Hepatocellular carcinoma (C220)
Sample description
DNAs extracted from tumor, non-tumor, and cirrhosis tissues
  • Tissue
    Liver
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V5
Fragmentation
Ultrasonic fragmentation
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
100 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Liver cirrhosis (ICD10: K746): 9 cases (15 samples)
7 healthy donors
Normal livers from healthy donors for living-donor liver transplantation
  • Health status
    Mixed
  • Subject count
    22 (Mixed)
Disease
Liver cirrhosis (K746)
Sample description
RNAs extracted from non-tumor and cirrhosis tissues from liver cirrhosis patients and normal livers from healthy donors
  • Tissue
    Liver
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq RNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation
Platform
Illumina HiSeq 4000
Read type
Paired-end
Read length
100 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)