Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0138-v2Release info

Latest

Research title

Clonal structure and oncogenic potential of liver cirrhosis tissues

Research overview

Aims
To elucidate the oncogenic potential of regeneration nodules in cirrhotic liver.
Methods
whole exome sequencing and RNA sequencing
Participants/materials
liver cirrhosis, hepatocellular carcinoma and healthy donor
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000203NGS (Exome, RNA-seq)
  • WES
  • RNA-seq
Controlled-access (Type I)2020-09-28

Data provider

Principal investigator
Atsushi Takai
Affiliation
Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

Research projects

No research projects.

Grants

NameTitleProject number
KAKENHI Grant-in-Aid for Scientific Research (B)
Role of regeneration nodule in cirrhotic liver on tumorigenesis
  • 17H04158

Related publications

TitleDOIDataset ID
Comprehensive analysis of genetic aberrations linked to tumorigenesis in regenerative nodules of liver cirrhosis.
https://doi.org/10.1007/s00535-019-01555-z (opens in a new tab)

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Robert TsaiInstitute of Biosciences & Technology, Texas A&M Health Science CenterTexas, United StatesGenome-wide Discovery of new Plasma DNA Methylation Markers for Tracking the Progression of NAFLD to NASH and HCC2020-11-09 – 2023-07-25
Jinyan HuangZhejiang University School of Medicine, 79 Qingchun Road, Hangzhou, 310003, Zhejiang, China. Biomedical big data center, the First Affiliated Hospital, Zhejiang UniversityChinaComprehensive analysis of alternative splicing in malignant tumors2022-03-15 – 2024-01-01
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31