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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000021

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
2.3 TB
File formats
  • BAM
  • TAR
Research
hum0017
Date published
2020-09-28
Date modified
2020-09-28
DDBJ Search
JGAD000021 (opens in a new tab)
JGA Study
JGAS000021 (opens in a new tab)

Analysis method

WES

Materials and participants
41 PCNSL cases
  • Health status
    Affected
  • Subject count
    41 (Individual)
Sample description
Genomic DNA extracted from surgically resected PCNSL tissues and paired peripheral blood cells (41 pairs)
  • Tissue
    Brain, PBMC, Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
NEBNext Ultra DNA Library Prep Kit for Illumina
SureSelect Human All Exon V5
Fragmentation
Ultrasonic fragmentation (Covaris LE220)
Platform
Illumina HiSeq 2000
Read type
Paired-end
Read length
100–105 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
30 PCNSL cases
  • Health status
    Affected
  • Subject count
    30 (Individual)
Sample description
RNA extracted from surgically resected PCNSL tissues
  • Tissue
    Brain
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra Directional RNA Library Prep Kit for Illumina
Fragmentation
RNA Seq Fragmentation Mix in the above library construction kit
Platform
Illumina HiSeq 2000
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)