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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000018

Type of data
HLA alleles and SNPs
in HLA region (7 loci)
Access criteria
Controlled-access (Type I)
Total data volume
35.4 MB
File formats
  • BED
  • BIM
  • FAM
  • TXT
Research
hum0028
Date published
2020-09-28
Date modified
2024-10-08
DDBJ Search
JGAD000018 (opens in a new tab)
JGA Study
JGAS000018 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
908 Japanese healthy controls
  • Health status
    Healthy
  • Subject count
    908 (Individual)
  • Population
    Japanese
Sample description
gDNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
HLA region (chr6:29,000,000-34,000,000, GRCh37)
8817 polymorphisms
(7149 SNPs, HLA 2-digit/4-digit polymorphisms: 226, HLA amino acid polymorphisms: 1442)
Reagent kit
HumanExome BeadChip Kit
HumanHap550 BeadChip Kit
HumanOmniExpress BeadChip Kit
Immunochip
WAKFlow HLA Typing Kit
Platform
Illumina HumanExome
Illumina HumanHap550
Illumina HumanOmniExpress
Illumina Immunochip
Reference genome
GRCh37
QC and filtering
Sample Call Rate < 0.98, SNP Call Rate < 0.99, HWE-P < 1x10^-6
Analysis method
GenCall software (GenomeStudio)
Variant count
8817 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)