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NBDC Human Database

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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0492-v1Release info

Latest

Research title

Exploratory research aimed at developing new drugs for difficult-to-treat immune-inflammatory diseases through industry-academia collaboration

Research overview

Aims
Although advances in our understanding of the disease mechanisms and the development of new drugs has improved the prognosis for patients with immune-inflammatory diseases such as rheumatoid arthritis, inflammatory bowel disease and autoimmune liver disease, there are still some patients who do not respond well to treatment or who are unable to discontinue the use of steroid drugs. This study aims to identify biomarkers, such as genes and proteins, that can be also used as new therapeutic targets in the blood and tissues of patients with these immune-inflammatory diseases who are starting new treatment.
Methods
Single cell RNA sequencing/TCR/BCR repertoire analyses, Spatial transcriptome analysis (Visium)
Participants/materials
labial salivary glands from 28 patients with Sjögren's syndrome and 10 patients with Sicca
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000915NGS (scRNA-seq/TCR/BCR repertoire)
NGS (Visium Spatial Gene Expression), Histological image
  • scRNA-seq + scTCR-seq + scBCR-seq
  • Visium 空間トランスクリプトーム + 病理画像
Controlled-access (Type I)2025-08-13

Data provider

Principal investigator
Masaru Takeshita
Affiliation
Division of Rheumatology, Department of Internal Medicine, Keio University School of Medicine

Research projects

No research projects.

Grants

NameTitleProject number
KAKENHI Grant-in-Aid for Early-Career Scientists
Single cell integrated analysis of antigen specificity and gene expression for the cure of autoimmune diseases
  • 20K17430
KAKENHI Grant-in-Aid for Scientific Research (C)
Elucidation of the Mechanisms of Autoantibody Production at Lesion Sites in Autoimmune Diseases
  • 22K08528
KAKENHI Grant-in-Aid for JSPS Fellows
Elucidation of Sjögren's syndrome pathogenesis through retrotransposon sequences
  • 21J00596
KAKENHI Grant-in-Aid for Scientific Research (B)
Molecular signatures in pre-RA patients by multi-omics analysis
  • 20H03720
Keio University Academic Promotion Fund
Elucidation of Autoimmune Mechanisms at Lesion Sites in Autoimmune Diseases and Development of Antigen-Specific Immunosuppressive Therapies
N/A
Keio University Fukuzawa Memorial Fund
Comprehensive Understanding of Autoimmunity and Practical Application of Antigen-Specific Immunosuppressive Therapies
N/A
Keio University Next-Generation Research Promotion Program
Comprehensive Analysis of Salivary Gland Lesions as Sites of Autoimmune Responses
N/A
Mochida Memorial Foundation for Medical and Pharmaceutical Research - Research Grant -
lucidation of Autoimmune Mechanisms in Lesional Tissues of Sjögren's Syndrome and Development of Antigen-Specific Immunosuppressive Therapies
N/A
Kowa Life Science Foundation - Research Grant -
Elucidation of Molecular Mechanisms Involved in Autoimmune Responses at Lesion Sites in Sjögren's Syndrome
N/A
Takeda Science Foundation - Medical Research Grant -
Elucidation of Autoimmune Mechanisms at Lesion Sites in Autoimmune Diseases
N/A
Japan Rheumatism Foundation - Research Grant for Rheumatic Disease Investigation -
Elucidation of Molecular Mechanisms Involved in Autoantigen-Specific B Cell Immune Responses in Various Autoimmune Diseases and Identification of Therapeutic Targets
N/A

Related publications

No related publications.

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31