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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0160-v1Release info

This page is a past version (v1). The latest version is v2.
Latest version (v2)

Research title

Genome sequencing analysis for esophageal squamous cell carcinoma

Research overview

Aims
To investigate genomic alterations of Japanese esophageal squamous cell carcinomas
Methods
DNAs were extracted from esophageal squamous cell carcinoma tissues and paired non-cancer (normal) tissues. NGS libaraies were prepared by using TruSeq Nano DNA Low Throughput Library Prep Kit for whole genome sequencing (WGS). Sequencing was perfomred by Illumina HiSeq 2000/2500/X Five.
Participants/materials
DNAs extracted from cancer tissues and non-cancer tissues of Japanese esophageal squamous cell carcinoma patients.
URL
N/A

Datasets

The list is the one this version published; each dataset's content is shown as it is now.

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000233NGS (WGS)
  • WGS
Controlled-access (Type I)2020-09-28
JGAD000405bam/gvcf data of NGS (WGS)
  • WGS
Controlled-access (Type I)2021-05-25

Data provider

Principal investigator
Hidewaki Nakagawa
Affiliation
RIKEN Center for Integrative Medical Sciences

Research projects

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Related publications

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Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Masayuki YamamotoTohoku Medical Megabank OrganizationJapanConstruction of Japanese whole genome database2019-06-24 – 2022-04-15
Kouya ShiraishiDivision of Genome Biology, National Cancer Research InstituteJapanElucidation of immune-system networks between host and tumor based on genomic analysis2019-08-05 – 2029-03-31