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NBDC Research ID:hum0160-v1
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Title

Genome sequencing analysis for esophageal squamous cell carcinoma

Research overview

Aims: To investigate genomic alterations of Japanese esophageal squamous cell carcinomas

Methods: DNAs were extracted from esophageal squamous cell carcinoma tissues and paired non-cancer (normal) tissues. NGS libaraies were prepared by using TruSeq Nano DNA Low Throughput Library Prep Kit for whole genome sequencing (WGS). Sequencing was perfomred by Illumina HiSeq 2000/2500/X Five.

Targets: DNAs extracted from cancer tissues and non-cancer tissues of Japanese esophageal squamous cell carcinoma patients.

Datasets

Dataset ID
Access type
Type of data
Release date
JGAD000233Controlled-access (Type I)NGS (WGS)2020-09-28
JGAD000405Controlled-access (Type I)NGS (WGS)2021-05-25

Data provider

    Representative
    Hidewaki Nakagawa
    Organiation
    RIKEN Center for Integrative Medical Sciences

Research projects

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URL
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Grants

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Title
Project number
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Related publications

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DOI
Datasets
No data

Controlled access users

Name
Organiation
Country
Research title
Period of data use
Datasets
Shiraishi KouyaNational Cancer Center Research InstituteJapanElucidation of immune-system networks between host and tumor based on genomic analysis2019-08-05—2029-03-31
Yamamoto MasayukiTohoku UniversityJapanConstruction of Japanese whole genome database2019-06-24—2022-04-15