HumanDBs

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NBDC Research ID:hum0159-v2

Release info

Latest

Title

Genome sequencing analysis for colorectal cancer

Research overview

Aims: To investigate genomic alterations of Japanese colorectal cancers

Methods: DNAs were extracted from colorectal cancer tissues and paired non-cancer (normal) tissues. NGS libaraies were prepared by using TruSeq DNA LT Sample Prep Kit or TruSeq Nano DNA Low Throughput Library Prep Kit for whole genome sequencing (WGS). Sequencing was perfomred by Illumina HiSeq 2000.

Targets: DNAs extracted from cancer tissues and non-cancer tissues of Japanese colorectal cancer patients.

Datasets

Dataset ID	Access type	Type of data	Release date
JGAD000235	Controlled-access (Type I)	NGS (WGS)	2021-06-01
JGAD000689	Controlled-access (Type I)	NGS (WGS)	2023-01-24
JGAD000888	Controlled-access (Type I)	NGS (WGS)	2024-10-17

Data provider

Representative: Hidewaki Nakagawa
Organiation: RIKEN Center for Integrative Medical Sciences

Research projects

Name	URL
No data

Grants

Name	Title	Project number
No data

Related publications

Title	DOI	Datasets
No data

Controlled access users

Name	Organiation	Country	Research title	Period of data use	Datasets
Arita Masanori	National Institute of Genetics	Japan	Provision of processed JGA data analyzed by DDBJ Center and NBDC	2021-10-07—2030-03-31	JGAD000235
Kohno Takashi	National Cancer Center Research Institute	Japan	Identification of genetic risk factors in AYA(Adolescence and Young Adult) cancer	2021-12-02—2028-12-31	JGAD000235