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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000888

Type of data
Processed data of JGAD000235 by JGA (mitochondrial variant calls)
Access criteria
Controlled-access (Type I)
Total data volume
773 KB
File formats
  • VCF
  • IDX
Research
hum0159
Date published
2024-10-17
Date modified
2024-10-17
DDBJ Search
JGAD000888 (opens in a new tab)
JGA Study
JGAS000157 (opens in a new tab)

Analysis method

WGS

Materials and participants
colorectal cancer (ICD10: C18): 10 cases
cancer tissues: 10 samples
paired non-cancer tissues: 10 samples
  • Health status
    Affected
  • Subject count
    10 (Individual)
Disease
colorectal cancer (C18)
Sample description
DNAs extracted from cancer tissues and paired non-cancer tissues from colorectal cancer patients
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA Sample Prep Kit
TruSeq Nano DNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2000
Read type
Paired-end
Read length
100 bp
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)