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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0157-v1Release info

Latest

Research title

Cancer clinical sequence and accompanying research for comprehensive genomic and epigenomic analyses

Research overview

Aims
Cancer clinical sequence and accompanying research for comprehensive genomic and epigenomic analyses
Methods
DNA and RNA from tumor tissues (FFPE) and DNA from normal blood cells were subjected to target capture DNA panel sequencing and RNA panel sequencing by using of NextSeq (Illumina).
Participants/materials
183 cancer cases (lung cancer: 53, soft tissue sarcoma: 39, colon cancer: 24, endometrial cancer: 15, ovarian cancer: 12, endometrial sarcoma: 8, hypopharyngeal cancer: 4, adenoid cystic carcinoma: 4, cancer of unknown primary: 5, other types of cancer: 19)
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000242NGS (Target Capture)
  • Targeted DNA sequencing
Controlled-access (Type I)2020-09-28

Data provider

Principal investigator
Kohei Miyazono
Affiliation
Department of Molecular Pathology, Graduate School of Medicine, The University of Tokyo

Research projects

No research projects.

Grants

NameTitleProject number
Program for an Integrated Database of Clinical and Genomic Information, Japan Agency for Medical Research and Development (AMED)
Establishment of infrastructure for genomic medicine and construction of knowledge database
  • JP18kk0205003
Leading Advanced Projects for medical innovation, Advanced Research & Development Programs for Medical Innovation, Japan Agency for Medical Research and Development (AMED-LEAP)
Project for Exploration of Cancer Therapeutic Targets
  • JP18am0001001
Practical Research for Innovative Cancer Control, Japan Agency for Medical Research and Development (AMED)
Implementation of precision medicine by the application of an innovative method for functional evaluation of oncogenes.
  • JP18ck0106252
Project for Cancer Research and Therapeutic Evolution (P-CREATE), Japan Agency for Medical Research and Development (AMED)
Elucidation of initiation and progression mechanism of human epithelial tumors towards identification of novel therapeutic targets
  • JP18cm0106502

Related publications

TitleDOIDataset ID
Comprehensive assay for the molecular profiling of cancer by target enrichment from formalin-fixed paraffin-embedded specimens.
https://doi.org/10.1111/cas.13968 (opens in a new tab)
MicroSEC filters sequence errors for formalin-fixed and paraffin-embedded samples
https://doi.org/10.1038/s42003-021-02930-4 (opens in a new tab)

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Hirofumi NakaokaDepartment of Cancer Genome Research, Sasaki InstituteJapanGenetic analysis of lung cancer2022-08-17 – 2026-07-23