Research ID
hum0015-v1Release info
This page is a past version (v1). The latest version is v3.
Latest version (v3)Research title
Construction of the Whole-genome Reference Panel of 3552 Japanese Individuals
Research overview
- Aims
- Construction of the whole-genome reference panel of Japanese individuals by deep whole-genome sequencing
- Methods
- DNA was extracted from the blood samples of the subjects. We conducted whole-genome sequencing by using HiSeq 2500. After genotype calling for each individual, genotype frequencies for 1070 individuals were pooled, and allele frequencies were calculated. We selected autosomal SNPs (minor allele frequency >5%) that matched known SNPs in dbSNP138.
- Participants/materials
- Selected 1070 individuals from the adult (age ≥ 20) cohort participants who gave the informed consent at the places for health survey in Miyagi prefecture, by removing relatives.
Datasets
The list is the one this version published; each dataset's content is shown as it is now.
| Cart | Dataset ID | Type of data | Analysis method | Access criteria | Date published |
|---|---|---|---|---|---|
| NHA000002 | Frequencies of known autosomal SNPs whose minor allele frequencies are more than 5% in 1070 participants. |
| Unrestricted-access | 2014-10-14 |
Data provider
- Principal investigator
- Masayuki Yamamoto
- Affiliation
- Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University
Research projects
| Name | URL |
|---|---|
Tohoku Medical Megabank Organization |
Grants
| Name | Title | Project number |
|---|---|---|
Ministry of Education, Culture, Sports, Science and TechnologyJapan | N/A | N/A |
Related publications
| Title | DOI | Dataset ID |
|---|---|---|
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals |