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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000002

Type of data
Frequencies of known autosomal SNPs whose minor allele frequencies are more than 5% in 1070 participants.
Access criteria
Unrestricted-access
Total data volume
74.5 MB
File formats
  • ZIP
Research
hum0015
Date published
2014-10-14
Date modified
2014-10-14
Secondary ID
hum0015.v1.freq.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0015.v1.freq.v1.zip74.5 MB

Analysis method

WGS

Materials and participants
1070 healthy Japanese individuals living in Miyagi prefecture
  • Health status
    Healthy
  • Subject count
    1070 (Individual)
  • Population
    Japanese
  • Age group
    Adult
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA PCR-Free Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris LE220)
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
N/A
Reference genome
GRCh37
Mapping
N/A
Mapping quality
N/A
QC and filtering
N/A
Analysis method
N/A
Coverage (depth)
32.4x
Variant count
4,301,546 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)