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Dataset ID

NHA000186

Type of data
GWAS for bullous pemphigoid
Access criteria
Unrestricted-access
Total data volume
43.0 MB
File formats
  • XLSX
  • ZIP
Research
hum0163
Date published
2023-04-21
Date modified
2023-04-21
Secondary ID
hum0163.v3.BPgwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0163.v3.BPgwas.v1.zip43.0 MB
hum0163.v3_gwas_header.xlsxDictionary file9.8 KB

Analysis method

Genotyping by array

Materials and participants
bullous pemphigoid (ICD10: L12.0): 90 cases
737 healthy controls
  • Health status
    Mixed
  • Subject count
    827 (Mixed)
  • Population
    Japanese
Disease
bullous pemphigoid (L120)
Sample description
DNA extracted from peripheral blood cells of bullous pemphigoid patients and B-lymphoblast cell lines
  • Tissue
    B cell line, Peripheral blood
  • Tumor / normal
    Normal
Cell line
Japanese B cell line
Sample provider
737 general populations derived from Epstein-Barr virus-transformed B-lymphoblast cell lines of unrelated Japanese individuals established by the Pharma SNP Consortium (PSC)
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
sample call rate < 0.99, SNP call rate < 0.99, HWE-P < 1x10^-6
Analysis method
GenCall software (GenomeStudio)
Variant count
526,267 SNPs (Autosomes)
Data use policy
NBDC data sharing policy (JGAP000001)