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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000183

Type of data
mobile element variations in 4,880 individuals from BBJ 1st cohort
Access criteria
Unrestricted-access
Total data volume
1.1 MB
File formats
  • TXT
  • ZIP
Research
hum0014
Date published
2023-04-05
Date modified
2023-04-05
Secondary ID
hum0014.v28.MEs.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
header_definition_hum0014.v28.txtDictionary file365 B
hum0014.v28.MEs.v1.zip1.1 MB

Analysis method

Mobile element variations (WGS)

Materials and participants
WGS data of 4,880 individuals from BBJ 1st cohort
- WGS data (JGAD000220) of the biobank Japan project (N=1,037)
- WGS data (JGAD000495) of 1,765 myocardial infarction patients and 199 dementia patients
- WGS data (AGDD_000005) of 225 gastric cancer patients
- 1,007 individuals from Asian Genome Project
- 617 colorectal cancer patients
- One individual excluded from AGDD_000005 by QC
- 10 individuals excluded from JGAD000220 by QC
  • Cohort
    BioBank Japan
  • Population
    Japanese
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
WGS
Target
N/A
Fragmentation
Ultrasonic fragmentation
Platform
Illumina HiSeq 2500
Illumina HiSeq X
Read type
Paired-end
Read length
151 bp (HiSeq X)
126 bp (HiSeq 2500)
Reference genome
GRCh37
Mapping
BWA-MEM
Mapping quality
N/A
QC and filtering
N/A
Analysis method
MEGAnE *2
Coverage (depth)
15x (Or more)
1235 subjects: 25x (Or more)
Variant count
24,933 (4880 subjects)
10,997 (1235 subjects)
Data use policy
NBDC data sharing policy (JGAP000001)