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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000175

Type of data
GWAS for AESD
Access criteria
Unrestricted-access
Total data volume
9.0 MB
File formats
  • XLSX
  • ZIP
Research
hum0347
Date published
2022-07-15
Date modified
2022-07-15
Secondary ID
hum0347.v2.gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0347.v2.gwas.v1.zip9.0 MB
hum0347_header_definition.xlsxDictionary file10.8 KB

Analysis method

Genotyping by array

Materials and participants
AESD (ICD-10: G934): 254 cases
healthy adult controls: 799 individuals
  • Health status
    Mixed
  • Subject count
    1053 (Individual)
Disease
AESD (G934)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Axiom 2.0 Reagent Kit
Platform
Affymetrix Japonica Array
Reference genome
GRCh37
QC and filtering
Exclude the following conditions:
Sample QCs:
(1) overall call rates < 0.97
(2) relatives (PI_HAT > 0.1875)
(3) outliers from Japanese cluster by principal component analysis
SNP QCs:
(1) SNP call rate < 0.99
(2) HWE P < 0.0001
(3) MAF < 0.05
(4) located in sex chromosomes or mitochondria
Analysis method
Affymetrix Power Tools ver. 1.18.2
Variant count
Autosomes: 445,917 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)