Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000162

Type of data
GWAS for 215 phenotypes
Access criteria
Unrestricted-access
Total data volume
567 GB
File formats
  • HTML
  • ZIP
Research
hum0197
Date published
2021-03-22
Date modified
2021-03-22
Secondary ID
hum0197.v3.gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
Per page
20
2050100

281–300 / 601

FileLabelSizeCopy URL
hum0197.v3.EUR.EcP.v1.zipDisease name: Ectopic pregnancy / Abbreviation: Ect_preg / ICD10: O00523 MB
hum0197.v3.EUR.EnC.v1.zipDisease name: Endometrial cancer / Abbreviation: EnC / ICD10: C54525 MB
hum0197.v3.EUR.Ep.v1.zipDisease name: Epilepsy / Abbreviation: Epilepsy / ICD10: G40/G41519 MB
hum0197.v3.EUR.FA.v1.zipDisease name: Food allergy / Abbreviation: Food_Allergy / ICD10: Z91.011.6 GB
hum0197.v3.EUR.FNP.v1.zipDisease name: Facial nerve palsy (Bell's palsy) / Abbreviation: FacialN_palsy / ICD10: G51.0525 MB
hum0197.v3.EUR.FS.v1.zipDisease name: Febrile seizure / Abbreviation: Febrile_Seizure / ICD10: R56.01.6 GB
hum0197.v3.EUR.GBP.v1.zipDisease name: Gall bladder polyp / Abbreviation: GB_polyp / ICD10: K82.81.6 GB
hum0197.v3.EUR.GC.v1.zipDisease name: Gastric cancer / Abbreviation: GaC / ICD10: C16529 MB
hum0197.v3.EUR.GD.v1.zipDisease name: Graves' disease / Abbreviation: GD / ICD10: E05.0524 MB
hum0197.v3.EUR.GERD.v1.zipDisease name: Gastroesophageal reflux disease / Abbreviation: GERD / ICD10: K21513 MB
hum0197.v3.EUR.GP.v1.zipDisease name: Gastric polyp / Abbreviation: Gastric_polyp / ICD10: K31.71.6 GB
hum0197.v3.EUR.GU.v1.zipDisease name: Gastric ulcer / Abbreviation: Gastric_Ulcer / ICD10: K25520 MB
hum0197.v3.EUR.Gla.v1.zipDisease name: Glaucoma / Abbreviation: Glaucoma / ICD10: H40517 MB
hum0197.v3.EUR.Goi.v1.zipDisease name: Goiter / Abbreviation: Goiter / ICD10: E04522 MB
hum0197.v3.EUR.HAV.v1.zipDisease name: Acute hepatitis by Hepatitis A virus / Abbreviation: HAV_hepatitis / ICD10: B15.91.5 GB
hum0197.v3.EUR.HC.v1.zipDisease name: Hypertrophic cardiomyopathy / Abbreviation: Hypertrophic_Cardiomyopathy / ICD10: I42.1/I42.2529 MB
hum0197.v3.EUR.HD.v1.zipDisease name: Hashimoto's disease / Abbreviation: Hashimoto_Disease / ICD10: E06.3515 MB
hum0197.v3.EUR.HI.v1.zipDisease name: Head injury / Abbreviation: Head_Injury / ICD10: S091.6 GB
hum0197.v3.EUR.HL.v1.zipDisease name: Hearing loss, difficulty in hearing / Abbreviation: Hearing_Loss / ICD10: H90515 MB
hum0197.v3.EUR.Her.v1.zipDisease name: Herpes infection / Abbreviation: Herpes / ICD10: B001.5 GB

281–300 / 601

Analysis method

genome wide SNPs

Materials and participants
Biobank Japan (n = 179,000), UK biobank (n = 361,000), FinnGen (n = 136,000), no. Phenotypes: 220
  • Health status
    Mixed
  • Subject count
    676,000 (Individual)
  • Cohort
    BioBank Japan, FinnGen, UK Biobank
  • Population
    British, Finnish, Japanese
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
FinnGen1 ThermoFisher Array
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
UK BiLEVE Axiom Array
UK Biobank Axiom Array
Platform
Applied Biosystems UK BiLEVE Axiom Array
Applied Biosystems UK Biobank Axiom Array
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Thermo Fisher Scientific FinnGen1 ThermoFisher Array
QC and filtering
BBJ: We included imputed variants with Rsq > 0.7.
UK Biobank: We excluded the variants with (i) INFO score ≤ 0.8, (ii) MAF ≤ 0.0001 (except for missense and protein-truncating variants annotated by VEP, which were excluded if MAF ≤ 1 × 10-6), and (iii) PHWE ≤ 1 × 10-10.
FinnGen: We excluded variants with an imputation INFO score < 0.8 or MAF < 0.0001.
Imputation
BBJ: Eagle, Minimac3
UK Biobank: IMPUTE4
FinnGen: beagle4.1
Analysis method
For binary traits, SAIGE software was used with age, age2, sex, age×sex, age2×sex, and top 20 principal components as covariates. For quantitative traits (biomarkers), BOLT-LMM or plink software was used with the same covariates.
Variant count
BBJ: 13,530,797 variants
UK Biobank: 13,791,467 variants
FinnGen: 16,859,359 variants
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)