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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000155

Type of data
GWAS for SJS/TEN
Access criteria
Unrestricted-access
Total data volume
111 MB
File formats
  • XLSX
  • ZIP
Research
hum0029
Date published
2020-12-21
Date modified
2020-12-21
Secondary ID
hum0029.v2.var.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0029-v2-var-v1-header.xlsxDictionary file11.0 KB
hum0029-v2-var-v1.zip111 MB

Analysis method

Genotyping by array

Materials and participants
133 SJS/TEN patients (ICD10: L511) and 418 healthy controls
  • Health status
    Mixed
  • Subject count
    551 (Individual)
Disease
SJS/TEN patients (L511)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
TruSeq DNA PCR-Free Library Prep Kit
Platform
Illumina HiSeq X
Reference genome
GRCh37
QC and filtering
variant call rates < 95%, MAF < 1%, or HWE p-value < 1×10^-5
Analysis method
GATK3.8 HaplotypeCaller, MELT 2.1.4, LUMPY 0.2.3, SVTyper 0.6.1
Variant count
7,173,860 variants
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)