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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
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Dataset ID

NHA000153

Type of data
GWAS for 3,206 Childhood Idiopathic Nephrotic Syndrome patients and 987 healthy adult controls
Access criteria
Unrestricted-access
Total data volume
125 MB
File formats
  • XLSX
  • ZIP
Research
hum0126
Date published
2020-09-01
Date modified
2020-09-01
Secondary ID
hum0126.v2.imp-gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0126.v2.imp-gwas.v1.zip125 MB
hum0126_v2_imp-gwas_v1_header.xlsxDictionary file11.8 KB

Analysis method

Genotyping by array

Materials and participants
987 Childhood Idiopathic Nephrotic Syndrome patients (ICD10: N049) and 3,206 healthy adult controls
  • Health status
    Mixed
  • Subject count
    4193 (Individual)
  • Age group
    Child
Disease
Childhood Idiopathic Nephrotic Syndrome patients (N049)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Axiom 2.0 Reagent Kit
Platform
Affymetrix Japonica Array
Reference genome
GRCh37
QC and filtering
Sample Call rate < 0.97, SNP call rate < 0.97, HWE P < 0.0001, MAF < 0.05
Imputation quality (Rsq) < 0.5
Analysis method
Axiom Analysis suite 1.0.0.3
Variant count
6,834,340 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)