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Dataset ID

NHA000150

Type of data
GWAS for coronary artery disease
Access criteria
Unrestricted-access
Total data volume
365 MB
File formats
  • TXT
  • ZIP
Research
hum0014
Date published
2020-08-17
Date modified
2020-08-17
Secondary ID
hum0014.v20.gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014_v20_README_CAD_GWAS.txtDictionary file1.9 KB
hum0014_v20_gwas_v1.zipsummary statistics365 MB

Analysis method

Genotyping by array (GWAS)

Materials and participants
25,892 coronary artery disease patients (ICD10: I20-25) and 142,336 controls
  • Health status
    Mixed
  • Subject count
    142,336 (Individual)
Disease
coronary artery disease patients (I20, I21, I22, I23, I24, I25)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
QC after imputation: Variants with imputation quality of Rsq < 0.3 and MAF < 0.0002 were excluded.
Imputation
minimac3 (BBJ-CAD reference panel)
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 19,707,525 variants
Data use policy
NBDC data sharing policy (JGAP000001)