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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000130

Type of data
Genotype frequencies for variants detected by the DMET and direct sequencing
Access criteria
Unrestricted-access
Total data volume
46.1 KB
File formats
  • ZIP
Research
hum0209
Date published
2019-12-13
Date modified
2019-12-13
Secondary ID
hum0209.v1.var.v1

Unrestricted-access files linked to this dataset

Download the URL list
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hum0209_v1_var_v1.zip46.1 KB

Analysis method

Genotyping by array

Materials and participants
RA (ICD10: M06.9): 166 cases
  • Health status
    Affected
  • Subject count
    166 (Individual)
Disease
RA (M069)
Sample description
DNA extracted from peripheral blood cells of RA patients treated with MTX
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
DMET Plus Premier Pack Kit
BigDye Terminator v3.1 Cycle Sequencing Kit
BigDye XTerminator Purification Kit
Platform
Applied Biosystems 3730xl DNA Analyzer
Applied Biosystems Veriti 96-Well Thermal Cycler
Thermo Fisher Scientific GeneChip Scanner 3000 7G
QC and filtering
SNP loci with copy number variation and loci on the sex chromosome were excluded from the analyses.
Analysis method
Array: the Affymetrix DMET Console Software
Direct sequencing: The 3730xl DNA Analyzer Software
Variant count
1916 variants
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)