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Dataset ID

NHA000085

Type of data
meta analysis of 3 GWASs for SUA level
Access criteria
Unrestricted-access
Total data volume
82.4 MB
File formats
  • XLSX
  • ZIP
Research
hum0167
Date published
2019-07-23
Date modified
2019-07-23
Secondary ID
hum0167.v1.meta.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
header_definition_hum0167.v1.xlsxDictionary file9.8 KB
hum0167.v1.meta.v1.zip82.4 MB

Analysis method

Genotyping by array

Materials and participants
[GWAS-1]
- J-MICC study: 10,621 participants
[GWAS-2]
- KING study: 2,095 participants
[GWAS-3]
- BBJ: 109,029 participants
  • Subject count
    121,745 (Individual)
  • Cohort
    BioBank Japan
  • Population
    Japanese
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmni2.5 BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina Human660W-Quad
Illumina HumanExome
Illumina HumanOmni2.5
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Post-imputation QC: Variants with imputation quality of Rsq < 0.7 in BBJ or Rsq < 0.3 in others were excluded. We also excluded variants with MAF < 0.005.
Imputation
SHAPEIT3 & minimac3 (1000G phase3v5; individuals of all ancestry) / MACH & minimac (1000G phase1v3; individuals of East Asian ancestry)
Analysis method
GenomeStudio / BeadStudio
Variant count
5,864,938 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)