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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
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Dataset ID

NHA000075

Type of data
meta analysis of 2 GWASs for T2DM with diabetic nephropathy
Access criteria
Unrestricted-access
Total data volume
318 MB
File formats
  • XLSX
  • ZIP
Research
hum0014
Date published
2018-12-10
Date modified
2018-12-10
Secondary ID
hum0014.v12.T2DMwN.v1, hum0014.v12.T2DMw.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
header_definition_hum0014.v12.xlsxDictionary file11.5 KB
hum0014.v12.T2DMwN.v1.zip318 MB

Analysis method

Genotyping by array

Materials and participants
[GWAS-1]
- 2,380 T2DM with diabetic nephropathy patients
- 5,234 T2DM without diabetic nephropathy patients
[GWAS-2]
- 429 T2DM with diabetic nephropathy patients
- 358 T2DM without diabetic nephropathy patients
  • Health status
    Affected
  • Subject count
    8401 (Individual)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Human610-Quad BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina Human610-Quad
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
sample call rate < 0.98, SNV call rate < 0.99, MAF < 0.1%,
HWE P < 1 x 10⁻⁶ in control
Imputation
MACH and Minimac (1000 Genomes phased JPT, CHB and Han Chinese South data n = 275, March 2012)
Analysis method
GenCall software (GenomeStudio)
Variant count
7,521,072 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)