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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000053

Type of data
GWAS for BMI
Access criteria
Unrestricted-access
Total data volume
417 MB
File formats
  • HTML
  • ZIP
Research
hum0014
Date published
2017-09-08
Date modified
2017-09-08
Secondary ID
hum0014.v6.158k.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014.v6.158k.v1.zipGWAS416 MB
hum0014_README_BMI_GWAS.htmlDictionary file25.5 KB
hum0014_README_FinalReport.htmlDetailed information on genotyping array for JGAD000123 and JGAD00012429.6 KB
hum0014_README_blast_information.htmlProbe information (BLAST) for JGAD000123 and JGAD00012427.5 KB

Analysis method

Genotyping by array

Materials and participants
182,505 individuals (158,284 individuals for BMI study)
  • Subject count
    182,505 (Individual)
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Genotyping QC: sample call rate < 0.98, SNV call rate < 0.99, HWE P < 1 x 10^-6
QC for reference panel:
After excluding 11 closely related individuals, variants with HWE P < 1.0 x 10^-6, MAF < 0.01 were excluded.
QC after imputation:
Variants with imputation quality of Rsq < 0.7 were excluded.
Imputation
minimac [imputation (1000 genomes Phase I v3)]
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 6,000,000 SNVs (Approx.)
X chromosome: 150,000 SNVs (Approx.)
Processed data type
Genotype data
GWAS summary statistics
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)