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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000050

Type of data
GWAS
Access criteria
Unrestricted-access
Total data volume
58.0 MB
File formats
  • CSV
  • XLSX
Research
hum0076
Date published
2016-10-05
Date modified
2016-10-05
Secondary ID
hum0076.v1.gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0076_1stgwas_160916.csv58.0 MB
hum0076_header_160916.xlsxDictionary file11.0 KB

Analysis method

Genotyping by array

Materials and participants
487 PBCs
476 healthy controls
  • Health status
    Mixed
  • Subject count
    963 (Individual)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Axiom 2.0 Reagent Kit
Platform
Affymetrix Axiom Genome-Wide ASI 1 Array
Reference genome
GRCh37
QC and filtering
Sample Call rate < 0.97, SNP call rate < 0.95, HWE P < 0.001, MAF < 0.05
Analysis method
GenCall software (Genotyping Console ver. 4.2.0.26)
Variant count
425,736 SNPs
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)