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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000045

Type of data
GWAS for T2DM [2]
Access criteria
Unrestricted-access
Total data volume
74.4 MB
File formats
  • XLSX
Research
hum0014
Date published
2016-01-28
Date modified
2016-01-28
Secondary ID
hum0014.v3.T2DM-2.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014.v1.freq.v1_dictionary.xlsxDictionary file9.7 KB
hum0014.v3.T2DM-2.v1.xlsx74.4 MB
hum0014_header_definition.xlsxDictionary file10.2 KB

Analysis method

Genotyping by array

Materials and participants
5646 T2DM patients
19,420 controls (patients with Colorectal cancer, Breast cancer, Prostate cancer, Lung cancer, Gastric cancer,
Arteriosclerosis obliterans, Cardiac arrhythmias, Brain infarction, Myocardial infarction, Gallbladder cancer and Cholangiocarcinoma, Pancreatic cancer, Drug eruptions,
Rheumatoid arthritis, Amyotrophic lateral sclerosis, Liver cancer, Liver cirrhosis, Osteoporosis, or Uterine myoma [without T2DM])
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina Human610-Quad
Reference genome
NCBI36
QC and filtering
sample call rate < 0.98, SNP call rate < 0.99, MAF < 0.01, HWE P < 1 x 10^-6 in control
Analysis method
GenCall software (GenomeStudio)
Variant count
479,088 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)