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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000006

Type of data
Genotype frequencies in 182 esophageal cancer patients
(JSNP data)
Access criteria
Unrestricted-access
Total data volume
6.8 MB
File formats
  • XLSX
  • ZIP
Research
hum0014
Date published
2015-12-28
Date modified
2015-12-28
Secondary ID
hum0014.v2.jsnp.182ec.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014.v2.jsnp.182ec.v1.zip6.7 MB
hum0014.v2.jsnp.182ec_Dic.xlsxDictionary file33.6 KB

Analysis method

Genotyping by array

Materials and participants
182 esophageal cancer patients (JSNP)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina HumanHap550
QC and filtering
sample call rate < 0.98, SNP call rate < 0.99, HWE P < 1 x 10^-6
Analysis method
GenCall software (GenomeStudio)
Variant count
503,734 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)