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NBDC Human Database

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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000001

Type of data
GWAS for MI
Access criteria
Unrestricted-access
Total data volume
74.8 MB
File formats
  • XLSX
Research
hum0014
Date published
2014-09-30
Date modified
2014-09-30
Secondary ID
hum0014.v1.freq.v1

Unrestricted-access files linked to this dataset

FileLabelSizeCopy URL
hum0014.v1.freq.v1_dictionary.xlsxDictionary file9.7 KB
hum0014_freq.xlsx74.8 MB
hum0014_header_definition.xlsxDictionary file10.2 KB

Analysis method

Genotyping by array

Materials and participants
1666 MI patients and 3198 controls
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina Human610-Quad
Illumina HumanHap550
Reference genome
NCBI36
QC and filtering
sample call rate ≧ 0.98, SNP call rate ≧ 0.99, HWE P ≧ 1 x 10^-6
Analysis method
GenCall software (GenomeStudio)
Variant count
455,781 SNPs