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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD001125

Type of data
Xenium In Situ Gene Expression, NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
315 GB
File formats
  • FASTQ
  • PARQUET
  • HDF5
  • TIFF
Research
hum0030
Date published
2026-10-23
Date modified
2026-10-23
DDBJ Search
JGAD001125 (opens in a new tab)
JGA Study
JGAS000964 (opens in a new tab)

Analysis method

Xenium In Situ Gene Expression

Materials and participants
Uterine carcinosarcoma (UCS): 8 cases
tumor tissues (FFPE): 8 samples
  • Health status
    Affected
  • Subject count
    8 (Individual)
  • Population
    Japanese
  • Sex
    Female
Disease
  • Uterine carcinosarcoma
Sample description
tumor tissues (FFPE)
  • Tissue
    Uterus
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Spatial transcriptomics
Target
330-gene custom panel (Xenium Human Breast Gene Expression Panel: 280 genes + 50 uterine carcinosarcoma-related genes)
Reagent kit
Xenium Cell Segmentation Add-on kit
Xenium Decoding Consumables
Xenium Decoding Reagents
Xenium Slides & Sample Prep Reagents
Platform
10x Genomics Xenium Analyzer
Analysis method
xenium-3.0.0.15, xenium-3.2.0.7
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Uterine carcinosarcoma (UCS): 8 cases
tumor tissues (FFPE): 60 samples
  • Health status
    Affected
  • Subject count
    8 (Individual)
  • Population
    Japanese
  • Sex
    Female
Disease
  • Uterine carcinosarcoma
Sample description
RNA extracted from microdissected tissue sections
  • Tissue
    Uterus
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Smart-seq2
Fragmentation
Tn5 transposase-mediated tagmentation
Platform
Illumina MiSeq
Read type
Paired-end
Read length
75 bp
Data use policy
NBDC data sharing policy (JGAP000001)