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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD001119

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Research
hum0608
DDBJ Search
JGAD001119 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
cutaneous melanoma (ICD10: C43): 55 cases
tumor tissues (FFPE specimens): 55 samples
- nail unit melanoma: 43 cases (22 early-stage, 21 late-stage)
- non-nail melanoma: 12 cases (6 plantar acral and 6 non-acral at late-stage (AJCC stage IIB or higher))
  • Health status
    Affected
  • Subject count
    55 (Individual)
Disease
  • cutaneous melanoma
Sample description
RNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
SMART-Seq Stranded Kit
Fragmentation
N/A
Platform
Illumina NovaSeq 6000
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)
No use by private-sector companies (JGAP000003)