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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD001062

Type of data
Xenium In Situ Gene Expression
Access criteria
Controlled-access (Type I)
Total data volume
27.9 GB
File formats
  • PARQUET
  • HDF5
  • TIFF
Research
hum0358
Date published
2026-08-21
Date modified
2026-08-21
DDBJ Search
JGAD001062 (opens in a new tab)
JGA Study
JGAS000918 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
gene_group.xlsx330 genes15.1 KB

Analysis method

Spatial transcriptomics

Materials and participants
HPV18-positive cervical cancer exhibiting a mixed histology of small cell neuroendocrine carcinoma (SCNEC) and adenocarcinoma (ICD10: C539): 1 case
tumor tissues (FFPE): 1 sample
  • Health status
    Affected
  • Subject count
    1 (Individual)
  • Sex
    Female
Disease
HPV18-positive cervical cancer exhibiting a mixed histology of small cell neuroendocrine carcinoma (SCNEC) and adenocarcinoma (C539)
Sample description
tumor tissues (FFPE)
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Spatial transcriptomics
Target
330 genes (Xenium Human Breast Gene Expression Panel: 280 genes + Xenium Add-on Custom 1 to 50 Gene Panel: 50 cervical cancer-specific genes)
Reagent kit
Xenium Cell Segmentation Add-on kit
Xenium Decoding Consumables
Xenium Decoding Reagents
Xenium Slides & Sample Prep Reagents
Platform
10x Genomics Xenium Analyzer
Analysis method
R (version 4.4.2), Seurat (version 5.3), Monocle3 (version 1.3.7), Slingshot, tradeSeq, DESeq2 (version 1.48.1)
Data use policy
NBDC data sharing policy (JGAP000001)