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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000988

Type of data
NGS (scRNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
62.9 GB
File formats
  • FASTQ
  • HDF5
Research
hum0406
Date published
2026-03-31
Date modified
2026-06-10
DDBJ Search
JGAD000988 (opens in a new tab)
JGA Study
JGAS000846 (opens in a new tab)

Analysis method

scRNA-seq

Materials and participants
Primary Ciliary Dyskinesia with a CCNO Variant (ICD10: Q348): 1 case
1. Airway epithelial cell sheet derived from iPSCs established from the patient's peripheral blood
2. Airway epithelial cell sheet derived from gene-corrected iPSCs established from the patient's peripheral blood
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
Primary Ciliary Dyskinesia with a CCNO Variant (Q348)
Sample description
RNAs extracted from single cells isolated from airway epithelial cell sheet derived from iPSCs established from the patient's peripheral blood
  • Tissue
    Airway epithelial cell
  • Tumor / normal
    Normal
Cell line
Gene-corrected iPSC-derived airway epithelial cell sheet
iPSC-derived airway epithelial cell sheet
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium GEM-X Single Cell 3' v4
Fragmentation
included in the above library construction kit (Enzymatic fragmentation)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
Read 1: 28 bp
Read 2: 90 bp
Reference genome
GRCh38
Mapping
Cell Ranger (v8.0.1)
QC and filtering
Cell Ranger (v8.0.1)
Analysis method
Cell Ranger (v8.0.1)
Gene count
38,606
Data use policy
NBDC data sharing policy (JGAP000001)