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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000976

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
47.9 GB
File formats
  • FASTQ
Research
hum0401
Date published
2025-10-28
Date modified
2025-10-28
DDBJ Search
JGAD000976 (opens in a new tab)
JGA Study
JGAS000834 (opens in a new tab)

Analysis method

WES

Materials and participants
chondrosarcoma (ICD10: C499): 2 cases
tumor tissue: 1 sample
organoid derived xenograft tumor: 1 sample
total: 4 samples
  • Health status
    Affected
  • Subject count
    4 (Individual)
Disease
  • chondrosarcoma
Sample description
DNAs extracted from normal and tumor tissues
  • Tissue
    Muscle, PDX
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NovaSeq 6000
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
chondrosarcoma (ICD10: C499): 2 cases
tumor tissue: 1 sample
non-tumor tissue (muscle tissue): 1 sample
organoid derived xenograft tumor: 1 sample
total: 6 samples
  • Health status
    Affected
  • Subject count
    3 (Individual)
Disease
  • chondrosarcoma
Sample description
RNAs extracted from normal and tumor tissues
  • Tissue
    Muscle, PDX
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra II Directional RNA Library Prep Kit for Illumina
Fragmentation
chemical fragmentation
Platform
Illumina NovaSeq 6000
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)