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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000965

Type of data
NGS (Exome)
Access criteria
Controlled-access (Type I)
Total data volume
3.7 GB
File formats
  • FASTQ
  • VCF
Research
hum0527
Date published
2025-08-06
Date modified
2025-10-24
DDBJ Search
JGAD000965 (opens in a new tab)
JGA Study
JGAS000823 (opens in a new tab)

Analysis method

WES

Materials and participants
FCL of the LFGT (ICD10: C82.9): 1 case
a frozen tumor tissue obtained from a surgically resected uterine cervical tumor: 1 sample
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
FCL of the LFGT (C829)
Sample description
DNAs extracted from a frozen tumor tissue
  • Tissue
    Cervix
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh38
Mapping
BWA-MEM (v0.7.17-r1188)
Mapping quality
Mapping rate 99.97%
QC and filtering
Quality control was performed using FastQC, trimming with Trimmomatic, duplicate removal with Picard, and variant filtering with GATK FilterMutectCalls.
Data use policy
NBDC data sharing policy (JGAP000001)