Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000925

Type of data
scRNA-seq, plasma proteomics data
Access criteria
Controlled-access (Type I)
Total data volume
2.1 TB
File formats
  • FASTQ
  • TSV
Research
hum0197
Date published
2025-04-30
Date modified
2025-04-30
DDBJ Search
JGAD000925 (opens in a new tab)
JGA Study
JGAS000783 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0197_v13_Phenotype_README.xlsx10.2 KB

Analysis method

scRNA-seq

Materials and participants
COVID-19 (ICD10: U071) : 30 + 43 + 15 cases
Healthy controls : 31 + 44 + 27 individuals
  • Health status
    Mixed
  • Subject count
    190 (Individual)
Disease
COVID-19 (U071)
Sample description
RNAs extracted from PBMC
  • Tissue
    PBMC, Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium Next GEM Chip G Single Cell Kit
Chromium Next GEM Single Cell 5' v1.1
Single Index Kit T Set A
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
91 bp
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)

Protein expression (2932 proteins)

Materials and participants
COVID-19 (ICD-10: U071): 83 cases
Healthy controls: 144 cases
  • Health status
    Mixed
  • Subject count
    227 (Individual)
Disease
COVID-19 (U071)
Sample description
Plasma
  • Tissue
    Plasma
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Proteomics
Target
N/A
Reagent kit
Olink Explore 3072
Fragmentation
N/A
Platform
Olink Explore 3072
Read type
N/A
Read length
N/A
Normalization
Normalized Protein eXpression (NPX) transformation
Analysis method
Olink Analyze R package
Data use policy
NBDC data sharing policy (JGAP000001)