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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000923

Type of data
NGS (WGS)
Access criteria
Controlled-access (Type I)
Total data volume
311 GB
File formats
  • VCF
  • TBI
Research
hum0501
Date published
2025-05-19
Date modified
2025-05-19
DDBJ Search
JGAD000923 (opens in a new tab)
JGA Study
JGAS000781 (opens in a new tab)

Analysis method

WGS

Materials and participants
1,323 healthy individuals
313 from ADRC (Asian DNA Repository Consortium)
486 from RIMG (Research Institute of Medical Genetics SB RAMS in Russia)
524 from GenomeAsia 100K Project (GenomeAsia 100K Consortium, 2019, Nature)
  • Health status
    Healthy
  • Subject count
    1323 (Individual)
  • Population
    Asian, North Eurasian
Sample description
gDNA extracted from saliva or peripheral blood
  • Tissue
    Peripheral blood, Saliva
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq Nano DNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
BWA-MEM v0.7.13
Read deduplication
SAMBLASTER
Realignment and base quality recalibration
N/A
Mapping quality
MAPQ = ~60
QC and filtering
Variants with VQSLOD <0 were excluded.
removed multi-allelic SNPs and indels, remaining only biallelic SNPs.
Analysis method
GATK v3.5
Coverage (depth)
20x (More than)
Variant count
52,589,813
Phenotype data
Not included
Data use policy
NBDC data sharing policy (JGAP000001)
No use by private-sector companies (JGAP000003)