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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000906

Type of data
NGS (WGS)
Access criteria
Controlled-access (Type I)
Total data volume
314 GB
File formats
  • FASTQ
  • CSV
Research
hum0486
Date published
2024-12-02
Date modified
2025-10-24
DDBJ Search
JGAD000906 (opens in a new tab)
JGA Study
JGAS000765 (opens in a new tab)

Analysis method

WGS

Materials and participants
biliary atresia (type I cyst) (ICD10: Q44.2): 5 cases
iPS cells generated from PBMCs: 5 samples
  • Health status
    Affected
  • Subject count
    5 (Individual)
Disease
biliary atresia (type I cyst) (Q442)
Sample description
DNAs extracted from iPS cells
  • Tissue
    iPSC, Peripheral blood
  • Tumor / normal
    Normal
Cell line
iPSC
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Illumina DNA PCR-Free Prep
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
CLC Genomics Workbench version 20
Mapping quality
Q30 > 80%
Coverage (depth)
30x (More than)
Data use policy
NBDC data sharing policy (JGAP000001)