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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000901

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
272 GB
File formats
  • BAM
  • BAI
Research
hum0405
Date published
2025-12-03
Date modified
2025-12-03
DDBJ Search
JGAD000901 (opens in a new tab)
JGA Study
JGAS000760 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
Pediatric B-cell precursor acute lymphocytic leukemia (ICD10: C910): 69 cases
leukemia cells from peripheral blood or bone marrow fluid: 69 samples
Pediatric acute myeloid leukemia (ICD10: C920): 9 cases (5 cases revealed pediatric B-cell precursor acute lymphocytic leukemia at onset and Pediatric acute myeloid leukemia at relapse)
whole blood or bone marrow aspirates at disease onset or relapse: 15 samples
B-cell precursor acute myeloid leukemia (ICD10: C91.3): 16 cases
T cells in each patient's infusion product sorted into CD38-CD73-Tim-3-HLA-DR+ (4 marker-defined; 4MD) fraction: 13 samples
non-4MD fractions: 16 samples
  • Health status
    Affected
  • Subject count
    94 (Individual)
  • Age group
    Child
Disease
Pediatric B-cell precursor acute lymphocytic leukemia (C910)
Pediatric acute myeloid leukemia (C920)
B-cell precursor acute myeloid leukemia (C913)
Sample description
RNAs extracted from leukemia cells or T-cells
  • Tissue
    Bone marrow, Peripheral blood, T cell
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra II Directional RNA Library Prep Kit for Illumina
Fragmentation
Heat treatment
Platform
Illumina HiSeq X
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
Genomon v2.6.2/v2.6.3
Mapping quality
unmapped reads < 5%
Coverage (breadth)
Uniquely mapped reads: 90% (More than)
Data use policy
NBDC data sharing policy (JGAP000001)