Dataset ID
JGAD000891
- Type of data
- Processed data of JGAD000335 by JGA (mitochondrial variant calls)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 556 KB
- File formats
- VCF
- IDX
- Research
- hum0201
- Date published
- 2024-10-17
- Date modified
- 2024-10-17
- DDBJ Search
- JGAD000891 (opens in a new tab)
- JGA Study
- JGAS000237 (opens in a new tab)
Analysis method
WGS
- Materials and participants
- Neoplastic disease: 23 cases (55 samples)
Small cell lung cancer (ICD10: C34)
Biliary tract cancer (ICD10: C23, C24, C78)
Colon cancer (ICD10: C18-20)
Duodenal cancer (ICD10: C17)
Esophageal cancer (ICD10: C15)
Stomach cancer (ICD10: C16, C78)
Liver cancer (ICD10: C22)
Pancreatic cancer (ICD10: C25) - Health statusAffected
- Subject count55 (Sample)
- Disease
- Small cell lung cancer
- Biliary tract cancer
- Colon cancer
- Duodenal cancer
- Esophageal cancer
- Stomach cancer
- Liver cancer
- Pancreatic cancer
- Sample description
- DNAs extracted from peripheral blood cells and organoids established from normal and cancer tissues of the patients
- TissueOrganoid, Peripheral blood
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- WGS
- Target
- N/A
- Fragmentation
- Ultrasonic fragmentation
- Platform
- Illumina HiSeq X
- Read type
- Paired-end
- Read length
- 300 bp
- Processed data type
- Mitochondrial variant calls
- Data use policy
- NBDC data sharing policy (JGAP000001)