Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000890

Type of data
NGS (WGS, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
1.5 TB
File formats
  • GENOZIP
Research
hum0197
Date published
2024-11-12
Date modified
2025-12-11
DDBJ Search
JGAD000890 (opens in a new tab)
JGA Study
JGAS000751 (opens in a new tab)

Analysis method

WGS

Materials and participants
HPV-associated oropharyngeal cancer (ICD10: C10): 14 cases
tumor tissues: 14 samples
non-tumor tissues (blood): 14 samples
  • Health status
    Affected
  • Subject count
    14 (Individual)
Disease
HPV-associated oropharyngeal cancer (C10)
Sample description
DNAs extracted from tumor tissues and blood samples
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA PCR-Free Library Prep Kit
Fragmentation
Ultrasonic fragmentation
Platform
MGI DNBSEQ-T7
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
HPV-associated oropharyngeal cancer (ICD10: C10): 19 cases
tumor tissues: 19 samples
Non-HPV-associated oropharyngeal cancer (ICD10: C10): 17 cases
tumor tissues: 17 samples
Healthy controls: 2 individuals
normal tonsils: 2 samples
  • Health status
    Mixed
  • Subject count
    38 (Individual)
Disease
HPV-associated oropharyngeal cancer (C10)
Non-HPV-associated oropharyngeal cancer (C10)
Sample description
RNAs extracted from tumor tissues and normal tonsils
  • Tissue
    Tonsil
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
chemical fragmentation
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)