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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000884

Type of data
NGS (Exome)
Access criteria
Controlled-access (Type I)
Total data volume
21.6 GB
File formats
  • BAM
  • BAI
Research
hum0419
Date published
2025-04-18
Date modified
2025-04-18
DDBJ Search
JGAD000884 (opens in a new tab)
JGA Study
JGAS000749 (opens in a new tab)

Analysis method

WES

Materials and participants
esophageal cancer (ICD10: C34.1, C34.3): 3 cases
tumor-derived organoids: 3 samples
  • Health status
    Affected
  • Subject count
    3 (Sample)
Disease
esophageal cancer (C341, C343)
Sample description
DNAs extracted from tumor-derived organoids
  • Tissue
    Esophagus, Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
151 bp
Reference genome
GRCh37
Mapping
DRAGEN Bio-IT Platform 3.9.5
Mapping quality
N/A
Coverage (depth)
98.21x
Data use policy
NBDC data sharing policy (JGAP000001)