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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000874

Type of data
The presence or absence of endogenous herpesvirus 6 and anellovirus load calculated from NGS (WGS) for COVID-19
Access criteria
Controlled-access (Type I)
Total data volume
38.5 KB
File formats
  • TSV
Research
hum0343
Date published
2024-10-04
Date modified
2024-10-04
DDBJ Search
JGAD000874 (opens in a new tab)
JGA Study
JGAS000739 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0343_viral_genome.txtList of viral sequences232 KB

Analysis method

WGS

Materials and participants
COVID-19 (ICD-10: U071): 1,164 cases (severe cases: 1,068)
  • Health status
    Affected
  • Subject count
    1164 (Individual)
  • Population
    East Asian
Disease
COVID-19 (U071)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA PCR-Free Library Prep Kit
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
QC and filtering
We conducted principal component analysis (PCA) against HapMap3 data using SNP data of the same individuals to confirm the East Asian genetic background.
Analysis method
https://github.com/shohei-kojima/integrated_HHV6_recon
https://github.com/shohei-kojima/human_anellovirus_detection
Refer to the softwares' GitHub repositry. List of viral sequences
Processed data type
Anellovirus load
eHHV-6 presence/absence
Data use policy
NBDC data sharing policy (JGAP000001)