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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000870

Type of data
NGS (WGS, Exome, Amplicon-seq, RNA-seq, scRNA-seq/ADT-seq/TCR-seq, CUT&RUN-seq)
Methylation array
Access criteria
Controlled-access (Type I)
Total data volume
7.6 TB
File formats
  • FASTQ
  • BAM
  • BAI
  • IDAT
Research
hum0405
Date published
2026-08-07
Date modified
2026-08-07
DDBJ Search
JGAD000870 (opens in a new tab)
JGA Study
JGAS000735 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0405_TGS-probe-panel.xlsx399 genes20.5 KB
xgen-human-cnv-backbone-hyb-panel-probes.bedxGen CNV Backbone Panel-Tech Access (IDT)454 KB

Analysis method

WGS

Materials and participants
CAEBV (ICD10: C84.5): 18 cases
EBV-infected cells and uninfected cells: 36 samples
  • Health status
    Affected
  • Subject count
    18 (Individual)
Disease
CAEBV (C845)
Sample description
DNAs extracted from EBV-infected cells and uninfected cells
  • Tissue
    EBV-infected cell
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Illumina DNA PCR-Free Prep
Lotus DNA Library Prep Kit
Fragmentation
Restriction enzyme reaction
on-bead tagmentation
Platform
Illumina NovaSeq 6000
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
Genomon v2.6.2
Mapping quality
N/A
Coverage (depth)
14 cases, tumor: 45x (More than)
14 cases, normal: 30x (More than)
4 cases, tumor: 100x (More than)
4 cases, normal: 30x (More than)
Data use policy
NBDC data sharing policy (JGAP000001)

Exome

Materials and participants
CAEBV (ICD10: C84.5): 23 cases
EBV-infected cells and uninfected cells: 46 samples
  • Health status
    Affected
  • Subject count
    23 (Individual)
Disease
CAEBV (C845)
Sample description
DNAs extracted from EBV-infected cells and uninfected cells
  • Tissue
    EBV-infected cell
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
Lotus DNA Library Prep Kit
xGen Exome Research Panel
Fragmentation
Restriction enzyme reaction
Platform
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
Genomon v2.6.2
Mapping quality
N/A
Coverage (depth)
Tumor: 100x (More than)
Normal: 100x (More than)
Data use policy
NBDC data sharing policy (JGAP000001)

Amplicon-seq

Materials and participants
CAEBV (ICD10: C84.5): 64 cases
EBV-infected cells, uninfected cells and peripheral blood cells: 185 samples
  • Health status
    Affected
  • Subject count
    64 (Individual)
Disease
CAEBV (C845)
Sample description
DNAs extracted from EBV-infected cells, uninfected cells and peripheral blood cells
  • Tissue
    EBV-infected cell, Peripheral blood
Sample provider
N/A
Experimental method
Amplicon-seq
Target
1: 399 genes
2: xGen CNV Backbone Panel-Tech Access (IDT)
3: EBV type 1 (RefSeq accession number; NC_007605) and type 2 (RefSeq accession number; NC_009334)
Reagent kit
Lotus DNA Library Prep Kit
Fragmentation
Restriction enzyme reaction
Platform
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
EBV type 1
GRCh37
Mapping
Genomon v2.6.2
Mapping quality
N/A
Coverage (depth)
399 genes: 1000x
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
CAEBV (ICD10: C84.5): 28 cases
EBV-infected cells and cell-lines
IM (ICD10: B27.0, B27.9): 6 cases
NK cells
4 healthy individuals
NK cells
52 samples in total
  • Health status
    Mixed
  • Subject count
    38 (Individual)
Disease
CAEBV (C845)
IM (B270, B279)
Sample description
RNAs extracted from EBV-infected cells, cell-lines and NK cells
  • Tissue
    Cell line, EBV-infected cell, NK cell
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext rRNA Depletion Kit
NEBNext Ultra II Directional RNA Library Prep Kit for Illumina
Fragmentation
Heat treatment
Platform
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
EBV type 1
GRCh37
Mapping
Genomon v2.6.2
Mapping quality
N/A
Data use policy
NBDC data sharing policy (JGAP000001)

Methylation Array

Materials and participants
CAEBV (ICD10: C84.5): 32 cases
EBV-infected cells and cell-lines
IM (ICD10: B27.0, B27.9): 6 cases
NK cells
4 healthy individuals
NK cells
54 samples in total
  • Health status
    Mixed
  • Subject count
    42 (Individual)
Disease
CAEBV (C845)
IM (B270, B279)
Sample description
DNAs extracted from EBV-infected cells, cell-lines and NK cells
  • Tissue
    Cell line, EBV-infected cell, NK cell
Sample provider
N/A
Experimental method
Methylation array
Target
N/A
Reagent kit
Infinium MethylationEPIC BeadChip Kit
Platform
Illumina Infinium MethylationEPIC
Probe count
N/A
Data use policy
NBDC data sharing policy (JGAP000001)

scRNA-seq/ADT-seq/TCR-seq

Materials and participants
CAEBV (ICD10: C84.5): 6 cases
IM (ICD10: B27.0, B27.9): 2 cases
2 healthy individuals
peripheral blood mononuclear cells (PBMC): 10 samples in total
  • Health status
    Mixed
  • Subject count
    10 (Individual)
Disease
CAEBV (C845)
IM (B270, B279)
Sample description
RNAs extracted from PBMCs
  • Tissue
    PBMC, Peripheral blood
Sample provider
N/A
Experimental method
scRNA-seq
TCR-seq
Target
N/A
Reagent kit
Chromium Next GEM Single Cell 5' v2
Chromium Single Cell V(D)J
Fragmentation
Restriction enzyme reaction
Platform
MGI DNBSEQ-G400
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)

CUT＆RUN-seq

Materials and participants
CAEBV (ICD10: C84.5): 2 cases
cell-lines
1 healthy individual
NK cells
24 samples in total
  • Health status
    Mixed
  • Subject count
    3 (Individual)
Disease
CAEBV (C845)
Sample description
DNAs extracted from cell-lines and NK cells
  • Tissue
    Cell line, NK cell
Sample provider
N/A
Experimental method
CUT&RUN-seq
Target
N/A
Reagent kit
CUTANA ChIC/CUT&RUN Kit Version 3
NEBNext Ultra II DNA Library Prep Kit for Illumina
Fragmentation
Restriction enzyme reaction
Platform
MGI DNBSEQ-G400
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
CUT&RUNTools 2.0 package
Mapping quality
N/A
Data use policy
NBDC data sharing policy (JGAP000001)