Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000859

Type of data: NGS (scRNA-seq)
Access criteria: Controlled-access (Type I)
Total data volume: 402 GB
File formats: FASTQ
Research: hum0472
Date published: 2024-08-27
Date modified: 2024-08-27
DDBJ Search: JGAD000859 (opens in a new tab)
JGA Study: JGAS000726 (opens in a new tab)

Analysis method

scRNA-seq

Materials and participants: Organoids derived from iPS cells of a single healthy individual: 9 samples; Health status
Healthy
Subject count
1 (Individual)
Sample description: RNAs extracted from organoids; Tissue
Organoid
Tumor / normal
Normal
Cell line: iPSC
Sample provider: N/A
Experimental method: scRNA-seq
Target: N/A
Reagent kit: Chromium Next GEM Single Cell 3' v3.1
Fragmentation: enzymatic fragmentation
Platform: Illumina NovaSeq 6000
Read type: Paired-end
Read length: 150 bp
Data use policy: NBDC data sharing policy (JGAP000001)