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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000830

Type of data
Xenium In Situ Gene Expression
Access criteria
Controlled-access (Type I)
Total data volume
183 GB
File formats
  • TAR
Research
hum0454
Date published
2024-12-12
Date modified
2024-12-12
DDBJ Search
JGAD000830 (opens in a new tab)
JGA Study
JGAS000697 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
target_gene.xlsx427 genes15.0 KB

Analysis method

Xenium 空間トランスクリプトーム

Materials and participants
Crohn's disease (ICD10: K509): 10 cases
8 cases without strong preoperative treatment such as steroids or biological agents
2 cases receiving TNFα inhibitors
ulcerative colitis: 4 cases
cytomegalovirus enteritis: 1 case
cancer: 1 case
  • Health status
    Affected
  • Subject count
    16 (Individual)
Disease
Crohn's disease (K509)
Sample description
surgical sections (FFPE)
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Spatial transcriptomics
Target
427 genes (multi tissue panel: 377 genes, custom: 50 genes)
Reagent kit
Xenium Decoding Consumables
Xenium Decoding Reagents
Xenium Slides & Sample Prep Reagents
Platform
10x Genomics Xenium Analyzer
Analysis method
xenium-1.7.1.0
Data use policy
NBDC data sharing policy (JGAP000001)