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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000767

Type of data
NGS (WGS)
NGS (scRNA-seq, scATAC-seq)
CyTOF
Olink
Methylation array
Access criteria
Controlled-access (Type I)
Total data volume
14.0 TB
File formats
  • FASTQ
  • TXT
  • CSV
Research
hum0290
Date published
2025-06-09
Date modified
2025-10-24
DDBJ Search
JGAD000767 (opens in a new tab)
JGA Study
JGAS000637 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
Fluidimg_MarkerList.xlsx30 proteins related to immune response10.1 KB

Analysis method

WGS

Materials and participants
51 healthy volunteers (51 samples)
  • Health status
    Healthy
  • Subject count
    51 (Individual)
  • Age group
    Adult
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
MagAttract HMW DNA Kit
TruSeq DNA PCR-Free Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
MGI DNBSEQ-T7
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

scRNA-seq + scATAC-seq

Materials and participants
94 healthy volunteers (125 samples)
  • Health status
    Healthy
  • Subject count
    94 (Individual)
  • Age group
    Adult
Sample description
DNAs/RNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scATAC-seq
scRNA-seq
Target
N/A
Reagent kit
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Illumina NovaSeq X
Read type
Paired-end
Read length
scRNA-seq: 118 bp
scATAC-seq: 99 bp
Reference genome
GRCh38
Analysis method
CellRanger-arc (ver2.0.0)
Data use policy
NBDC data sharing policy (JGAP000001)

Mass cytometry (CyTOF)

Materials and participants
43 healthy volunteers (43 samples)
  • Health status
    Healthy
  • Subject count
    43 (Individual)
  • Age group
    Mixed
Sample description
peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
CyTOF
Target
30 proteins related to immune response
Reagent kit
Maxpar Direct Immune Profiling Assay
Platform
Fluidigm Helios
Analysis method
Maxpar Pathsetter (Cat. #401018)
Data use policy
NBDC data sharing policy (JGAP000001)

Proteomics (Olink, batch1: 2941 / batch2: 2939 proteins)

Materials and participants
35 healthy volunteers (35 samples)
  • Health status
    Healthy
  • Subject count
    35 (Individual)
  • Age group
    Mixed
Sample description
Plasma
  • Tissue
    Plasma
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Proteomics
Target
N/A
Reagent kit
Olink Explore 3072
Fragmentation
N/A
Platform
Olink Explore 3072
Read type
N/A
Read length
N/A
Normalization
NPX manager
Analysis method
NPX manager
Data use policy
NBDC data sharing policy (JGAP000001)

メチル化アレイ

Materials and participants
51 healthy volunteers (88 samples)
  • Health status
    Healthy
  • Subject count
    51 (Individual)
  • Age group
    Mixed
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Methylation array
Target
N/A
Reagent kit
EZ DNA Methylation Kit
Infinium HumanMethylation450 BeadChip Kit
Platform
Illumina Infinium MethylationEPIC
QC and filtering
N/A
Normalization
N/A
Analysis method
iScan system, GenomeStudio Software
Probe count
865,918 probes
Data use policy
NBDC data sharing policy (JGAP000001)