Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000760

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
26.0 GB
File formats
  • FASTQ
  • CSV
Research
hum0393
Date published
2025-10-29
Date modified
2025-10-29
DDBJ Search
JGAD000760 (opens in a new tab)
JGA Study
JGAS000630 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
treatment naïve IgG4-RD (ICD10: M359): 4 cases
Submandibular glands: 3 samples
PBMCs: 4 samples
primary Sjögren's syndrome (ICD10: M350): 3 cases
PBMCs: 3 samples
Healthy control: 3 individuals
PBMCs: 3 samples
CD19+cells and PanT cells were obtained from each sample: total 26 samples
  • Health status
    Mixed
  • Subject count
    22 (Individual)
Disease
treatment naïve IgG4-RD (M359)
primary Sjögren's syndrome (M350)
Sample description
RNAs extracted from CD19+cells and PanT cells
  • Tissue
    Peripheral blood, Submandibular gland
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra II DNA Library Prep Kit for Illumina
SMART-Seq
Fragmentation
included in the above library construction kit
Platform
Illumina NextSeq 500
Read type
Paired-end
Read length
36 bp
Reference genome
GRCh37
Mapping
CLC Genomics Workbench
QC and filtering
N/A
Analysis method
CLC Genomics Workbench
Gene count
57,768
Data use policy
NBDC data sharing policy (JGAP000001)