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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000740

Type of data
NGS (Amplicon-seq)
Access criteria
Controlled-access (Type I)
Total data volume
54.0 GB
File formats
  • FASTQ
Research
hum0344
Date published
2023-05-10
Date modified
2023-05-10
DDBJ Search
JGAD000740 (opens in a new tab)
JGA Study
JGAS000611 (opens in a new tab)

Analysis method

RNA Amplicon-seq

Materials and participants
Chronic kidney disease, CKD stage G1, G2, G4, G5 (ICD10: N18.1, N18.2, N18.4, N18.5): 77 cases (78 samples)
HEK293 cell line: 1 sample
  • Health status
    Affected
  • Subject count
    77 (Individual)
Disease
G5 (N181, N182, N184, N185)
Sample description
mitochondrial DNAs extracted from non-tumor tissues from chronic kidney disease patients and HEK293 cell line
  • Tissue
    Kidney
  • Tumor / normal
    Normal
Cell line
HEK293
Sample provider
293 0HEK-2931 (American Type Culture Collection, CRL-1573™)
Experimental method
Amplicon-seq
Target
mitochondrial genome
Reagent kit
KAPA Hyper Prep Kit
TruSeq DNA Sample Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
126 bp
Data use policy
NBDC data sharing policy (JGAP000001)