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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000728

Type of data
NGS (Exome)
Access criteria
Controlled-access (Type I)
Total data volume
169 GB
File formats
  • FASTQ
Research
hum0385
Date published
2024-01-12
Date modified
2024-01-12
DDBJ Search
JGAD000728 (opens in a new tab)
JGA Study
JGAS000599 (opens in a new tab)

Analysis method

WES

Materials and participants
cholangiolocarcinoma (ICD10: C221): 8 cases
tumor tissue: 8 samples, non-tumor tissue: 8 samples, recurrent tumor tissue: 2 samples
combined hepatocellular-cholangiocarcinoma (ICD10: C227): 13 cases
tumor tissue: 13 samples, non-tumor tissue: 13 samples, recurrent tumor tissue: 2 samples
  • Health status
    Affected
  • Subject count
    21 (Individual)
Disease
cholangiolocarcinoma (C221)
combined hepatocellular-cholangiocarcinoma (C227)
Sample description
DNAs extracted from tumor and non-tumor tissues
  • Tissue
    Liver
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation (Covaris LE220)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)