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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000712

Type of data
NGS (Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
21.3 GB
File formats
  • BAM
Research
hum0376
Date published
2022-12-19
Date modified
2023-03-20
DDBJ Search
JGAD000712 (opens in a new tab)
JGA Study
JGAS000585 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
endometrial cancer (ICD10: C54.1) : 2 + 4 cases
tumor tissue: 1 sample each
patient-derived xenograft: 1 sample each
  • Health status
    Affected
  • Subject count
    12 (Sample)
Disease
endometrial cancer (C541)
Sample description
DNAs extracted from tumor tissues and xenograft samples
  • Tissue
    PDX
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
NCC Oncopanel v4
https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html
Reagent kit
KAPA Hyper Prep Kit
SureSelect XT Reagent Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NextSeq 500
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
WA-MEM
Mapping quality
≥0
Coverage (depth)
UXE009T-Fr2: 1240.7x
UXE009T2P8-Fr2: 1119.6x
UXE010T-Fr2: 1496.7x
UXE010T3P8-Fr2: 1225x
UXE001T-Fr1: 2039.1x
UXE001P8-Fr1: 1952.7x
UXE004T-Fr1: 2180.5x
UXE004P8-Fr1: 2518.6x
UXE005T-Fr1: 2141.6x
UXE005P8-Fr1: 1830.4x
UXE008T-Fr1: 2337.9x
UXE008P8-Fr1: 2155.6x
Data use policy
NBDC data sharing policy (JGAP000001)