Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000705

Type of data
NGS (Amplicon-seq)
Access criteria
Controlled-access (Type I)
Total data volume
169 MB
File formats
  • VCF
Research
hum0377
Date published
2022-11-28
Date modified
2022-11-28
DDBJ Search
JGAD000705 (opens in a new tab)
JGA Study
JGAS000579 (opens in a new tab)

Analysis method

RNA Amplicon-seq

Materials and participants
LQTS (ICD10: I45.81) : 556 cases
  • Health status
    Affected
  • Subject count
    556 (Individual)
Disease
LQTS (I458)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Amplicon-seq
Target
LQTS causative 15 genes and LQTS related 85 genes*1
Reagent kit
Ion AmpliSeq Library Kit for Chef DL8
Fragmentation
N/A
Platform
Thermo Fisher Scientific Ion Proton
Read type
Paired-end
Read length
119 bp (Mean)
Reference genome
GRCh37
Mapping
Ion Torrent Variant Caller
Mapping quality
Mapped reads: 2,485,134
On target region: 98.21%
Analysis method
Ion Torrent Variant Caller
Coverage (depth)
473.5x
Data use policy
NBDC data sharing policy (JGAP000001)