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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000687

Type of data
Processed data of JGAD000335 by JGA
Access criteria
Controlled-access (Type I)
Total data volume
926 GB
File formats
  • CRAM
  • CRAI
  • VCF
  • TBI
  • HTML
  • Markdown
  • TAR
Research
hum0201
Date published
2023-08-21
Date modified
2024-10-17
DDBJ Search
JGAD000687 (opens in a new tab)
JGA Study
JGAS000237 (opens in a new tab)

Analysis method

WGS

Materials and participants
Neoplastic disease: 23 cases (55 samples)
Small cell lung cancer (ICD10: C34)
Biliary tract cancer (ICD10: C23, C24, C78)
Colon cancer (ICD10: C18-20)
Duodenal cancer (ICD10: C17)
Esophageal cancer (ICD10: C15)
Stomach cancer (ICD10: C16, C78)
Liver cancer (ICD10: C22)
Pancreatic cancer (ICD10: C25)
  • Health status
    Affected
  • Subject count
    55 (Sample)
Disease
Small cell lung cancer (C34)
Biliary tract cancer (C23, C24, C78)
Colon cancer (C18, C19, C20)
Duodenal cancer (C17)
Esophageal cancer (C15)
Stomach cancer (C16, C78)
Liver cancer (C22)
Pancreatic cancer (C25)
Sample description
DNAs extracted from peripheral blood cells and organoids established from normal and cancer tissues of the patients
  • Tissue
    Organoid, Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Fragmentation
Ultrasonic fragmentation
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
300 bp
Dataset ID of original data
JGAD000335
Processing method
Whole Genome Sequencing Analysis (germline)
Data use policy
NBDC data sharing policy (JGAP000001)